inital commit. basic heatmap generator. still have to make many options configurable.
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					*.png
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					# End of https://www.toptal.com/developers/gitignore/api/python
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								outputHightMap.py
									
										
									
									
									
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								outputHightMap.py
									
										
									
									
									
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					#! /usr/bin/env python3
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					#command line arguments:
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					#    --help, -h, outputs usage of the program
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					#    -x, -y, outputs width and hight of the output image
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					#    --output, -o, name of output file. if there are multiple input files, there will be a number prepended to this.
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					#    after all comamnd line arguments, file or files(space seperated) to process.
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					import numpy as np
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					import sys, argparse, laspy, logging
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					import seaborn as sns; sns.set_theme()
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					import matplotlib.pyplot as plt
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					from PIL import Image
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					logging.basicConfig(format='%(levelname)s:%(message)s', level=logging.INFO)
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					imgX=100
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					imgY=100
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					#TODO: make it iterate over multiple files.
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					inFile = sys.argv[1]
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					lasFile = laspy.file.File(inFile, mode = "r")
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					#import each dimention scaled.
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					x = lasFile.x
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					y = lasFile.y
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					z = lasFile.z
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					maxes = np.array(lasFile.header.max)*np.array(lasFile.header.scale)
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					mins = np.array(lasFile.header.min)*np.array(lasFile.header.scale)
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					logging.debug(f'max values is {maxes}')
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					logging.debug(f'min values is {mins}')
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					intensity = lasFile.intensity
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					#dimention that will be z(top down) dimention in final heatmap. TODO: auto detect this based on dimention with least variance.
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					zDim=0
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					xDim=1
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					yDim=2
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					points = np.stack((x,y,z,intensity), axis=-1)
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					#points should now look like
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					#[[x,y,z,intensity]
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					# [x,y,z,intensity]
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					# ...
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					# [x,y,z,intensity]
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					# [x,y,z,intensity]]
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					logging.debug(f'points is\n{points}')
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					xRange = maxes[xDim]-mins[xDim]
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					yRange = maxes[yDim]-mins[yDim]
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					zRange = maxes[zDim]-mins[zDim]
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					def sort(array):
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					    #sort by zDim column, first to last.
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					    logging.debug(f'zDim sliced points is\n{array[:,zDim]}')
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					    #the [::-1] reverses the resulting array, so that sortedPoints will be from biggest to smallest.
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					    ind = np.argsort(array[:,zDim])[::-1]
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					    sortedPoints = array[ind]
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					    logging.debug(f'sortedPoints is\n{sortedPoints}')
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					    return sortedPoints
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					sortedPoints = sort(points)
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					imageArray = np.zeros((imgX, imgY))
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					def scale(array, xRange, yRange, maxX, maxY):
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					    logging.debug(f'xRange is {xRange} and yRange is {yRange}')
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					    xScale = maxX/xRange
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					    yScale = maxY/yRange
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					    scaledArray = sortedPoints[:, 0:3]
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					    scaledArray[:,xDim]=scaledArray[:,xDim]-mins[xDim]
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					    scaledArray[:,xDim]=scaledArray[:,xDim]*xScale
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					    logging.debug(f'xmin in scaledArray is {scaledArray[:,xDim].min()}')
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					    logging.debug(f'xmin in scaledArray is {scaledArray[:,xDim].max()}')
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					    scaledArray[:,yDim]=scaledArray[:,yDim]-mins[yDim]
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					    scaledArray[:,yDim]=scaledArray[:,yDim]*yScale
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					    logging.debug(f'ymin in scaledArray is {scaledArray[:,yDim].min()}')
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					    logging.debug(f'ymin in scaledArray is {scaledArray[:,yDim].max()}')
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					    logging.debug(f'scaledArray is\n{scaledArray}')
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					    return scaledArray
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					scaledArray = scale(points, xRange, yRange, imgX, imgY)
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					def isInxyRange(xMin, xMax, yMin, yMax, xVal, yVal):
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					    return (xMin<=xVal) and (xVal<xMax) and (yMin<=yVal) and (yVal<yMax)
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					for x in range(imgX):
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					    for y in range(imgY):
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					        if x==imgX:
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					            xMax=x+2
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					        else:
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					            xMax=x+1
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					        if y==imgY:
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					            yMax=y+2
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					        else:
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					            yMax=y+1
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					        zVal=0
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					        logging.debug(f'yMax is {yMax} and xMax is {xMax}')
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					        for i in range(scaledArray.shape[0]):
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					            if isInxyRange(x, xMax, y, yMax, scaledArray[i,xDim], scaledArray[i,yDim]):
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					                zVal = scaledArray[i,zDim]
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					                break;
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					        imageArray[x,y]=zVal
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					        logging.info(f'zVal at {x},{y} is {zVal}')
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					logging.debug(f'imageArray is {imageArray}')
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					heatMap = sns.heatmap(imageArray, center=((maxes[zDim]+mins[zDim])/2), square=True)
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					heatMapFig = heatMap.get_figure()
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					heatMapFig.savefig("output.png")
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